| SOUTH SHORE UNIVERSITY HOSPITAL | Westbury | E20 Health Care | $1.1B | 20 |
| Rochester Institute of Technology | Rochester | B430 Education | $1B | 23 |
| White Plains Hospital Medical Center | White Plains | E220 Health Care | $1B | 12 |
| IBM MEDICAL BENEFITS TRUST | Brooklyn | — | $1B | 0 |
| College Board | New York | B900 Education | $1B | 16 |
| FORDHAM UNIVERSITY | Bronx | B430 Education | $1B | 21 |
| Physician Affiliate Group of New York PC | New York | E20 Health Care | $1B | 36 |
| JPMORGAN CHASE FOUNDATION | New York | — | $995.5M | 0 |
| UNITED HEALTH SERVICES HOSPITALS INC | Binghamton | E220 Health Care | $993.8M | 21 |
| ST FRANCIS HOSPITAL | Roslyn | E220 Health Care | $960.2M | 12 |
| BronxCare Health Systems | Bronx | E220 Health Care | $950.1M | 13 |
| Vassar Brothers Medical Center | Poughkeepsie | E220 Health Care | $904.3M | 14 |
| GOOD SAMARITAN HOSPITAL MEDICAL CENTER | West Islip | E220 Health Care | $857.8M | 10 |
| FOUNDATION TO PROMOTE OPEN SOCIETY | New York | T22 Philanthropy, Voluntarism & Grantmaking Foundations | $842.8M | 0 |
| ST JOHN'S UNIVERSITY NEW YORK | Jamaica | B430 Education | $799.6M | 9 |
| MANAGEMENT-ILA MANAGED HEALTH | New York | — | $799.3M | 2 |
| JAMAICA HOSPITAL MEDICAL CENTER | Jamaica | E220 Health Care | $795.1M | 9 |
| MEDECINS SANS FRONTIERES USA INC | New York | Q300 International, Foreign Affairs & National Security | $776.9M | 26 |
| NYC SCHOOL SUPPORT SERVICES INC | New York | B11 Education | $767.4M | 7 |
| SOUTH NASSAU COMMUNITIES HOSPITAL INC | Oceanside | E22 Health Care | $760.6M | 15 |
| PLAN INTERNATIONAL INC | New York | Q330 International, Foreign Affairs & National Security | $755.9M | 15 |
| NORTHWELL HEALTH LABORATORIES | Westbury | E60 Health Care | $743.5M | 14 |
| ST PETER'S HOSPITAL | Albany | E220 Health Care | $736.5M | 16 |
| MANHATTAN AND BRONX SURFACE TRANSIT OPERATING AUTHORITY | New York | — | $736.1M | 5 |
| THE UNITY HOSPITAL OF ROCHESTER | Rochester | E220 Health Care | $733.1M | 18 |
| Huntington Hospital Association | Westbury | E220 Health Care | $722.9M | 9 |
| UNITED STATES FUND FOR UNICEF | New York | Q420 International, Foreign Affairs & National Security | $720.4M | 14 |
| PACE UNIVERSITY | New York | B40 Education | $707.7M | 36 |
| METROPOLITAN MUSEUM OF ART | New York | A510 Arts, Culture & Humanities | $697.6M | 18 |
| THE MARY IMOGENE BASSETT HOSPITAL | Cooperstown | E220 Health Care | $694.5M | 8 |
| Rensselaer Polytechnic Institute | Troy | B430 Education | $666.6M | 20 |
| HOFSTRA UNIVERSITY | Hempstead | B430 Education | $653.5M | 20 |
| CENTERLIGHT HEALTHCARE INC | Flushing | E210 Health Care | $646.6M | 11 |
| ROCKEFELLER PHILANTHROPY ADVISORS INC | New York | T500 Philanthropy, Voluntarism & Grantmaking Foundations | $644.9M | 13 |
| BON SECOURS CHARITY HEALTH SYSTEM AFFILIATED GROUP | Suffern | E21 Health Care | $636.4M | 12 |
| YOUNG MEN'S CHRISTIAN ASSOCIATION RETIREMENT FUND | New York | Y300 Mutual & Membership Benefit | $606.4M | 14 |
| BAR ILAN UNIVERSITY IN ISRAEL INC | New York | — | $603.1M | 10 |
| The New School | New York | B430 Education | $602.9M | 23 |
| Research Foundation of the City University of New York | New York | B110 Education | $600.3M | 13 |
| NORTHERN WESTCHESTER HOSPITAL ASSOCIATION | Westbury | E220 Health Care | $594M | 18 |
| NEW YORK STATE NURSES ASSOCIATION | Albany | Y43 Mutual & Membership Benefit | $584.7M | 5 |
| Garnet Health Medical Center | Middletown | E220 Health Care | $577.7M | 14 |
| ST BARNABAS HOSPITAL | Bronx | E20 Health Care | $573.3M | 11 |
| AMERICAN UNIVERSITY OF BEIRUT | New York | B43Z Education | $571.8M | 31 |
| ST JOSEPH'S HOSPITAL HEALTH CENTER | Syracuse | E220 Health Care | $569.8M | 20 |
| NEW YORK BLOOD CENTER INC | New York | E610 Health Care | $564.8M | 29 |
| CROUSE HEALTH HOSPITAL INC | Syracuse | E220 Health Care | $564M | 13 |
| NEW YORK HOTEL TRADES COUNCIL AND HOTEL | New York | — | $562M | 17 |
| PENSION COMM JOINT INDUSTRY BOARD OF THE ELECTRICAL INDUSTRY | Flushing | — | $525.4M | 0 |
| DENISE AND MICHAEL KELLEN FOUNDATION INC | New York | T20 Philanthropy, Voluntarism & Grantmaking Foundations | $514.4M | 1 |
